Module Bistro_bioinfo.Tophat

val tophat1 : ?⁠color:bool ‑> Bowtie.index Bistro.Std.workflow ‑> [ `single_end of 'a Defs.fastq Bistro.Std.workflow list | `paired_end of 'a Defs.fastq Bistro.Std.workflow list * 'a Defs.fastq Bistro.Std.workflow list ] ‑> [ `tophat_output ] Bistro.Std.directory Bistro.Std.workflow

val tophat2 : Bowtie2.index Bistro.Std.workflow ‑> [ `single_end of 'a Defs.fastq Bistro.Std.workflow list | `paired_end of 'a Defs.fastq Bistro.Std.workflow list * 'a Defs.fastq Bistro.Std.workflow list ] ‑> [ `tophat_output ] Bistro.Std.directory Bistro.Std.workflow

val accepted_hits : ([ `tophat_output ], Defs.bam) Bistro.Std.selector

val junctions : ([ `tophat_output ], Defs.bed6) Bistro.Std.selector