Module Bistro_bioinfo.Bowtie

type index = [ `bowtie_index ] Bistro.Std.directory
val bowtie_build : ?⁠packed:bool ‑> ?⁠color:bool ‑> Defs.fasta Bistro.Std.workflow ‑> index Bistro.Std.workflow
val bowtie : ?⁠l:int ‑> ?⁠e:int ‑> ?⁠m:int ‑> ?⁠fastq_format:'a Fastq.format ‑> ?⁠n:int ‑> ?⁠v:int ‑> ?⁠maxins:int ‑> index Bistro.Std.workflow ‑> [ `single_end of 'a Defs.fastq Bistro.Std.workflow list | `paired_end of 'a Defs.fastq Bistro.Std.workflow list * 'a Defs.fastq Bistro.Std.workflow list ] ‑> Defs.sam Bistro.Std.workflow