Module Bistro_bioinfo.Macs2

val pileup : ?⁠extsize:int ‑> ?⁠both_direction:bool ‑> Defs.bam Bistro.Std.workflow ‑> Ucsc_gb.bedGraph Bistro.Std.workflow

type gsize = [

| `hs

| `mm

| `ce

| `dm

| `gsize of int

]

type keep_dup = [

| `all

| `auto

| `int of int

]

type _ format

val sam : Defs.sam format

val bam : Defs.bam format

val callpeak : ?⁠pvalue:float ‑> ?⁠qvalue:float ‑> ?⁠gsize:gsize ‑> ?⁠call_summits:bool ‑> ?⁠fix_bimodal:bool ‑> ?⁠mfold:(int * int) ‑> ?⁠extsize:int ‑> ?⁠nomodel:bool ‑> ?⁠bdg:bool ‑> ?⁠control:'a Bistro.Std.workflow list ‑> ?⁠keep_dup:keep_dup ‑> 'a format ‑> 'a Bistro.Std.workflow list ‑> [ `macs2_callpeak_output ] Bistro.Std.directory Bistro.Std.workflow

class type peaks_xls = object ... end

val peaks_xls : ([ `macs2_callpeak_output ], peaks_xls) Bistro.Std.selector

class type narrow_peaks = object ... end

val narrow_peaks : ([ `macs2_callpeak_output ], narrow_peaks) Bistro.Std.selector

class type peak_summits = object ... end

val peak_summits : ([ `macs2_callpeak_output ], peak_summits) Bistro.Std.selector

val callpeak_broad : ?⁠pvalue:float ‑> ?⁠qvalue:float ‑> ?⁠gsize:gsize ‑> ?⁠call_summits:bool ‑> ?⁠fix_bimodal:bool ‑> ?⁠mfold:(int * int) ‑> ?⁠extsize:int ‑> ?⁠nomodel:bool ‑> ?⁠bdg:bool ‑> ?⁠control:'a Bistro.Std.workflow list ‑> ?⁠keep_dup:keep_dup ‑> 'a format ‑> 'a Bistro.Std.workflow list ‑> [ `macs2_callpeak_broad_output ] Bistro.Std.directory Bistro.Std.workflow

class type broad_peaks = object ... end

val broad_peaks : ([ `macs2_callpeak_broad_output ], broad_peaks) Bistro.Std.selector