Module Bistro_bioinfo.Bedtools

val env : Bistro.docker_image
type 'a input
val bed : Bistro_bioinfo.Defs.#bed3 input
val gff : Defs.gff input
module Cmd : sig ... end
val slop : ?⁠strand:bool ‑> ?⁠header:bool ‑> mode:[ `both of int | `left of int | `right of int | `both_pct of float | `left_pct of float | `right_pct of float ] ‑> 'a input ‑> 'a Bistro.Std.workflow ‑> Ucsc_gb.chrom_sizes Bistro.Std.workflow ‑> 'a Bistro.Std.workflow
val intersect : ?⁠ubam:bool ‑> ?⁠wa:bool ‑> ?⁠wb:bool ‑> ?⁠loj:bool ‑> ?⁠wo:bool ‑> ?⁠wao:bool ‑> ?⁠u:bool ‑> ?⁠c:bool ‑> ?⁠v:bool ‑> ?⁠f:float ‑> ?⁠_F:float ‑> ?⁠r:bool ‑> ?⁠e:bool ‑> ?⁠s:bool ‑> ?⁠_S:bool ‑> ?⁠split:bool ‑> ?⁠sorted:bool ‑> ?⁠g:Ucsc_gb.chrom_sizes Bistro.Std.workflow ‑> ?⁠header:bool ‑> ?⁠filenames:bool ‑> ?⁠sortout:bool ‑> Bistro_bioinfo.Defs.#bed3 Bistro.Std.workflow ‑> Bistro_bioinfo.Defs.#bed3 Bistro.Std.workflow list ‑> Bistro_bioinfo.Defs.#bed3 Bistro.Std.workflow
val bamtobed : ?⁠bed12:bool ‑> ?⁠split:bool ‑> ?⁠splitD:bool ‑> ?⁠ed:bool ‑> ?⁠tag:bool ‑> ?⁠cigar:bool ‑> Defs.bam Bistro.Std.workflow ‑> Bistro_bioinfo.Defs.#bed6 Bistro.Std.workflow